msmu.read_maxquant

Reads MaxQuant output and returns a MuData object.

Parameters:

Name	Type	Description	Default
identification_file	str | Path | list	Path to the MaxQuant output directory.	required
label	Literal['tmt', 'label_free']	Label type ('tmt' or 'label_free').	required
acquisition	Literal['dda', 'dia']	Acquisition method ('dda' or 'dia'). Note: 'dia' is not yet implemented.	required
drop_search_result	bool	Whether to drop the raw search result after reading. Default is False.	False
_quantification	bool	Whether to include quantification data. Default is True.	True
sdrf_file	str | Path | None	Optional SDRF metadata file to merge into obs.	None
validate_sdrf	bool	Validate the SDRF with sdrf-pipelines if installed. Default is True.	True

Returns:

Type	Description
MuData	A MuData object containing the MaxQuant data.