msmu.io.read_sage

Reads Sage output and returns a MuData object.

Parameters:

Name	Type	Description	Default
identification_file	str | Path	Path to the results.sage.tsv.	required
label	Literal['tmt', 'label_free']	Label for the Sage output ('tmt' or 'label_free').	required
quantification_file	str | Path | None	Whether to include quantification data. Default is None.	None
sdrf_file	str | Path | None	Optional SDRF metadata file to merge into obs.	None
validate_sdrf	bool	Validate the SDRF with sdrf-pipelines if installed. Default is True.	True

Returns:

Type	Description
MuData	A MuData object containing the Sage data.