msmu.io.read_diann

Reads DIA-NN output and returns a MuData object.

Parameters:

Name	Type	Description	Default
identification_file	str | Path | list	Path to the DIA-NN output file or directory.	required
level	Literal['precursor', 'protein_group']	Level of the output to read ('precursor' or 'protein_group'). Note: 'protein_group' is not yet implemented.	'precursor'
sdrf_file	str | Path | None	Optional SDRF metadata file to merge into obs.	None
validate_sdrf	bool	Validate the SDRF with sdrf-pipelines if installed. Default is True.	True

Returns:

Type	Description
MuData	A MuData object containing the DIA-NN data.