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msmu.io.write_csv

Exports MuData modalities to CSV/TSV files.

Parameters:

Name Type Description Default
mdata MuData

MuData object containing the data to export.

required
modality str

The modality to export (e.g., 'psm', 'peptide', 'protein').

required
filename str | Path

Path to the output file.

required
sep str

Separator for the output file (e.g., ',', ' ').

required
include str | list[str] | None

List of columns to include.

None
exclude str | list[str] | None

List of columns to exclude.

None
quantification bool

Whether to include quantification data.

True