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msmu.io.to_readable

Convert MuData modality to a human-readable format.

Parameters:

Name Type Description Default
mdata MuData

MuData object containing the data to convert.

required
modality str

The modality to convert (e.g., 'psm', 'peptide', 'protein').

required
include str | list[str] | None

List of columns to include.

None
exclude str | list[str] | None

List of columns to exclude.

None
quantification bool

Whether to include quantification data.

True

Returns:

Type Description
DataFrame

A pandas DataFrame in a human-readable format.