# Generated by msmu from recorded provenance, not the current environment.
# Environment IDs: ["0fdbd2a16785c9f231122251c5d373224ddfbafe1004eeb69d3ea0ba5159fea9"]
# Version pins only: original package sources, conda builds and native dependencies are not captured.
# Runtime settings and uncommitted source edits are not restored by this file.
# Recorded context: {"architecture":"arm64","implementation":"CPython","msmu_source":{"commit":"g1a265acc9","dirty":null},"numpy_errors":{"divide":"warn","invalid":"warn","over":"warn","under":"ignore"},"os":"Darwin","os_release":"27.0.0","python":"3.13.5","thread_settings":{},"threadpools":[{"internal_api":"openmp","num_threads":14,"prefix":"libomp","user_api":"openmp","version":null}]}
# Create: uv venv --python 3.13.5 .venv-replay
# Install: uv pip sync --python .venv-replay requirements.txt

anndata==0.13.4
annotated-doc==0.0.5
annotated-types==0.8.0
antlr4-python3-runtime==4.9.3
anyio==4.15.1
appnope==1.0.0
array-api-compat==1.15.0
asttokens==3.0.2
attrs==26.1.0
beartype==0.22.9
biopython==1.88
blis==1.3.3
catalogue==2.0.10
category-encoders==2.11.1
certifi==2026.7.22
charset-normalizer==3.5.1
choreographer==1.4.0
click==8.5.0
cloudpathlib==0.25.0
cloudpickle==3.1.2
comm==0.2.3
confection==1.3.3
contourpy==1.4.0
cramjam==2.14.0
cycler==0.12.1
cymem==2.0.13
debugpy==1.8.22
defusedxml==0.7.1
dill==0.4.1
directlfq==0.3.3
donfig==0.8.1.post1
executing==2.2.1
fast-array-utils==1.5.1
fastai==2.8.12
fastcluster==1.3.0
fastcore==2.2.28
fastdownload==0.0.8
fastjsonschema==2.22.2
fastparquet==2026.9.0
fastprogress==1.0.5
fasttransform==0.0.5
filelock==3.32.7
fonttools==4.66.1
formulaic==1.2.2
fsspec==2026.9.0
google-crc32c==1.9.0
h11==0.16.0
h5py==3.16.0
httpcore==1.0.9
httpx==0.28.1
idna==3.19
inmoose==0.9.1
interface-meta==2.0.1
ipykernel==7.3.0
ipython==9.17.1
ipython-pygments-lexers==1.1.1
ipywidgets==8.1.9
jedi==0.20.0
jinja2==3.1.6
joblib==1.6.0
jsonschema==4.26.0
jsonschema-specifications==2025.9.1
jupyter-client==8.10.0
jupyter-core==5.9.1
jupyterlab-widgets==3.0.17
kaleido==1.5.0
kiwisolver==1.5.1
legacy-api-wrap==1.5
llvmlite==0.50.0
logistro==2.0.1
markdown-it-py==4.2.0
markupsafe==3.0.4
matplotlib==3.11.2
matplotlib-inline==0.2.2
mdurl==0.1.2
mofapy2==0.7.5
mofax==0.3.7
mpmath==1.3.0
mrmr-selection==0.2.8
msgspec==0.22.0
msmu==0.4.3
mudata==0.4.1
multiprocess==0.70.19
muon==0.1.9
murmurhash==1.0.15
nanobind-backend==1.0.0
narwhals==2.27.1
natsort==8.4.0
nbformat==5.11.1
nest-asyncio2==1.7.2
networkx==3.7
njab==0.1.1
numba==0.68.0
numcodecs==0.17.0
numpy==2.5.4
omegaconf==2.3.1
orjson==3.12.0
packaging==26.3
pandas==2.3.3
pandas-flavor==0.8.1
parso==0.8.7
patsy==1.0.3
pexpect==4.9.0
pillow==12.3.0
pimms-learn==0.5.2
pingouin==0.5.5
pip==26.1.2
platformdirs==4.13.0
plotly==7.1.0
plum-dispatch==2.9.0
polars==2.0.0
polars-runtime-32==2.0.0
preshed==3.0.13
prompt-toolkit==3.0.53
protobuf==7.36.2
psutil==7.2.2
ptyprocess==0.7.0
pure-eval==0.2.4
pyarrow==26.0.0
pydantic==2.14.1
pydantic-core==2.50.1
pydantic-settings==2.15.0
pygments==2.21.0
pynndescent==0.6.0
pyopenms==3.6.0
pyparsing==3.3.3
python-dateutil==2.9.0.post0
python-dotenv==1.2.4
pytz==2026.3.post1
pyyaml==6.0.3
pyzmq==27.2.0
referencing==0.37.0
requests==2.34.2
rich==15.0.0
rpds-py==2026.6.3
scanpy==1.12.4
scikit-learn==1.9.1
scipy==1.18.1
scverse-misc==0.1.6
sdrf-pipelines==0.1.6
seaborn==0.13.2
session-info2==0.4.2
setuptools==84.0.0
shellingham==1.5.4
simplejson==4.2.0
six==1.17.0
smart-open==8.0.1
spacy==3.8.16
spacy-legacy==3.0.12
spacy-loggers==1.0.5
srsly==2.5.3
stack-data==0.6.3
statsmodels==0.15.0
sympy==1.14.0
tabulate==0.10.0
thinc==8.3.13
threadpoolctl==3.7.0
torch==2.14.0
torchvision==0.29.0
tornado==6.5.10
tqdm==4.70.1
traitlets==5.16.1
typer==0.27.2
typing-extensions==4.16.0
typing-inspection==0.4.4
tzdata==2026.4
umap-learn==0.5.12
urllib3==2.8.0
wasabi==1.1.3
wcwidth==0.8.3
weasel==1.0.0
widgetsnbextension==4.0.16
wrapt==2.5.1
xarray==2026.7.0
zarr==3.4.1