msmu.read_fragpipe
Alias for :class:FragPipeFacade.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
identification_file
|
Path to the FragPipe output directory. |
required | |
quantification_file
|
Path to the FragPipe quantification file (if applicable, for LFQ). |
required | |
label
|
Label for the FragPipe output ('tmt' or 'label_free'). |
required | |
acquisition
|
Acquisition method ('dda' or 'dia'). |
required |
Returns:
| Type | Description |
|---|---|
FragPipeFacade
|
A MuData object containing the FragPipe data at PSM level |
Usage
mdata = mm.read_fragpipe(identification_file, quantification_file, label, acquisition)