msmu.pl.plot_umap

Plots UMAP embeddings for a modality colored/grouped by observations.

Parameters:

Name	Type	Description	Default
mdata	MuData	MuData object containing UMAP embeddings.	required
modality	str	Target modality; defaults to 'protein'.	'protein'
groupby	str | None	Observation column used to group traces.	None
colorby	str | None	Observation column used for coloring (when applicable).	None
template	str	Plotly template for colorway.	DEFAULT_TEMPLATE
obs_column	str | None	Observation column used for labeling/group resolution.	None
key	str	Key in .obsm where the UMAP dimensions are stored; defaults to 'X_umap'.	'X_umap'
**kwargs	str	Additional layout options forwarded to Plotly.	{}

Returns:

Type	Description
Figure	Scatter plot of UMAP embeddings.