msmu.pl.plot_intensity

Visualizes intensity distributions for a modality using histograms, box, or violin plots.

Parameters:

Name	Type	Description	Default
mdata	MuData	MuData object containing the modality to visualize.	required
modality	str	Target modality (psm, peptide, protein, or site).	required
groupby	str | None	Observation column used to group traces.	None
colorby	str | None	Observation column used for coloring (when applicable).	None
ptype	str	Plot type: 'hist', 'box', or 'vln'.	'hist'
template	str	Plotly template for colorway.	DEFAULT_TEMPLATE
bins	int	Number of bins for histogram view.	30
obs_column	str | None	Observation column used for labeling/group resolution.	None
**kwargs	str	Additional layout options forwarded to Plotly.	{}

Returns:

Type	Description
Figure	Intensity distribution figure.